Aquarius Liquid Probes

Satellites probes
SubTelomeres Probes
Whole Chromosome Painting Probes
Microdeletion Syndrome probes
Haematology Probes
   
Chromoprobe Multiprobes Systems
Chromoprobe Multiprobe-T
Chromoprobe Multiprobe-I
Chromoprobe Octochrome
Haematology Panels
   
Microdeletion Syndrome Probes
Cytocell offers a comprehensive range of Microdeletion Syndrome probes available in the Aquarius liquid format. The probes are directly labelled and ready to use in hybridisation solution so removing the need to prepare the probe. Each microdeletion probe is accompanied by a control probe, labelled in a different colour, which serves as a confirmatory probe for the identification of the chromosome of interest. The kits are supplied in an economical 10 test format and come complete with DAPI counterstain. The protocol is rapid and simple and follows a co-denaturation of the FISH probe and target DNA simultaneously.

Features
> Aquarius liquid probe format
> Directly labelled microdeletion syndrome critical region probe
> Ready to use: pre-mixed in hybridisation solution
> Simple and clean: co-denaturation protocol
> 10 assay kit format which includes DAPI counterstain and full instructions for use
> Internal control probe
The probe mixtures are designed for fluorescence in situ hybridisation of interphase cells and metaphase chromosomes from cultured peripheral blood cells.

Référence

Sondes

 

LPU004

DiGeorge/VCFS TUPLE 1 + 22q13.3
Unique !
Clone N85A3 (locus SHANK3) for the control probe in 22qter

LPU010

DiGeorge/VCFS N25 + 22q13.3

LPU005

Prader Willi/Angelman SNRPN
+ control 15qter

Locus SNRPN and control telomere 15qter
For interphase FISH !

LPU006

Angelman UBE3A + control 15qter

Locus D15S10 and control telomere 15qter
For interphase FISH !

LPU007

Smith-Magenis + Miller-Dieker

2 tests in one single tube !

LPU009

Wolf-Hirschhorn + control 4qter

 Optimal coverage
of the breaking points !

LPU011

Williams-Beuren + control sat7
DiGeorge/VCFS TUPLE1 Region probe and 22q13.3 Deletion Syndrome Probe
TUPLE1: Red Fluorophore 22q Subtelomere Specific Probe (clone N85A3): Green Fluorophore
10 tests - Reference LPU004
Download the protocol

DiGeorge, Velocardiofacial (VCFS), and Conotruncal Anomaly Face syndromes (CATCH22) are characterised by a microdeletion in band 22q11.2. The incidence of these deletions is around 1:4000 making it one of the most common genetic defects. The 2 Mb DiGeorge Critical Region is deleted in up to 90% of patients, whilst a minimal critical region of 480-575 Kb contains the TUPLE1 (HIRA) gene, which is proposed to be responsible for the observed phenotype.
The DiGeorge/VCFS TUPLE1 Region probe encompasses the entire TUPLE1 gene and flanking DNA. It is directly labelled with a red fluorophore (Texas Red spectrum) and accompanied with a 22q subtelomere specific probe (clone n85a3) labelled with a green fluorophore (FITC spectrum).
The 22q subtelomere specific probe (clone n85a3) can be used to detect deletions involved in the 22q13.3 Deletion Syndrome. The clone n85a3 contains the ProSAP2/SHANK3 gene, coding for a structural protein of the postsynaptic density of excitation synapses and expressed in the cortex and cerebellum. This gene is proposed to be a good candidate gene for the 22q13.3 Deletion Syndrome.
Download the Publication

DiGeorge/VCFS N25 (D22S75) Region Probe and 22q13.3 Deletion Syndrome Probe
N25 (D22S75): Red Fluorophore 22q Subtelomere Specific Probe (clone n85a3): Green Fluorophore
10 tests - Reference LPU010
Download the protocol
The DiGeorge/VCFS N25 Region probe locates within the DiGeorge VCFS minimal critical region at D22S75. It is approximately 90 Kb incorporating the CTP gene and possibly the CLTD gene. It is labelled with a red fluorophore (Texas Red spectrum) and it may be used to identify deletions of band 22q11.2 found in DiGeorge and associated syndromes. It is accompanied by the subtelomere specific probe at 22qter (clone n85a3) labelled with a green fluorophore (FITC spectrum).
The 22q subtelomere specific probe (clone n85a3) can be used to detect deletions involved in the 22q13.3 Deletion Syndrome. The clone n85a3 contains the ProSAP2/SHANK3 gene, coding for a structural protein of the postsynaptic density of excitation synapses and expressed in the cortex and cerebellum. This gene is proposed to be a good candidate gene for the 22q13.3 Deletion Syndrome. Download the Publication
Prader Willi/Angelman SNRPN + 15qter control Probes
SNRPN/Imprinting Centre: Red Fluorophore 15q Subtelomere Specific Probe (clone 154P1): Green Fluorophore
10 tests - Reference LPU005
Download the protocol
Prader-Willi syndrome (PWS) and Angelman syndrome (AS) are caused by the paternal or maternal loss of genes in 15q11-13, respectively. Around 70% of patients exhibit a deletion of 3-4 Mb, whilst 2-4% of patients exhibit a smaller deletion of the Imprinting Centre (IC). Uniparental disomy accounts for the remaining patients with PWS, but only 80% of AS patients exhibit these defects. The remaining AS are believed to have mutations of one or more genes (UBE3A) in the critical region.
SNRPN is one of four imprinted loci mapping to the critical region. The imprinting centre is 100 Kb proximal to SNRPN. Parental deletions or mutations in the IC impair the imprinting process in 15q11-13 and thus cause the two distinct diseases. The probe mixture cannot detect small deletions of the Angelman region or uniparental disomy.
The Prader-Willi/Angelman Region probe contains the SNRPN gene and the imprinting centre. A 15q subtelomere probe is supplied and both probes are directly labelled, SNRPN with a red fluorophore (Texas Red spectrum) and 15qter with a green fluorophore (FITC spectrum).
Angelman UBE3A + 15qter control Probes
UBE3A/D15S10: Red Fluorophore 15q Subtelomere Specific Probe (clone 154P1): Green Fluorophore
10 tests - Reference LPU006
Download the protocol
In 70% of patients with Prader-Willi or Angelman Syndrome (AS) a large interstitial deletion of 3-4 Mb at 15q11-13 is observed. The remainder exhibit uniparental disomy or mutations in the Imprinting Centre. However, 20% of AS patients do not, suggesting the involvement of a single AS gene. The candidate UBE3A gene lies within the minimum AS critical region and is mutated in 20-30% of AS patients with normal methylation patterns and biparental contribution of 15q11-13. The Angelman Region probe mixture contains the majority of the UBE3A gene, including D15S10 and a 15q subtelomere control probe. The Angelman probe is directly labelled with a red fluorophore (Texas Red spectrum) and the 15qter probe with a green fluorophore (FITC spectrum).
Smith-Magenis/Miller-Dieker/ILS Probe Combination
Smith-Magenis: FLI (SMCR 17p11.2) Green Fluorophore Miller-Dieker/Isolated Lissencephaly Sequence: LISI (MDS/ILS 17p13.3) Red Fluorophore
10 tests - Reference LPU007
Download the protocol
Smith-Magenis syndrome (SMS), caused by an interstitial deletion of 5 Mb of band 17p11.2, is a multiple congenital anomaly syndrome characterised by mental retardation, neuro-behavioural abnormalities, sleep disturbances, short stature, minor craniofacial and skeletal anomalies, congenital heart defects and renal anomalies. The FLI gene, in the critical region, is deleted in SMS patients.
Miller-Dieker syndrome (MDS), caused by an interstitial deletion of physically contiguous genes in 17p13.3, is characterised by classical lissencephaly, characteristic facial appearance and other birth defects. Isolated lissencephaly sequence (ILS) consists of classical lissencephaly alone and in 40% of patients the same region is deleted. MDS patients always show deletions of the candidate gene LIS1.
The Smith-Magenis/Miller-Dieker/ILS probe combination targets the FLI gene and the LIS1 gene. The Smith-Magenis probe is directly labelled with a green fluorophore (FITC spectrum) and the Miller-Dieker/ILS probe with a red fluorophore (Texas Red spectrum).
Williams-Beuren + D7Z1 control Probes
Williams-Beuren Probe: Red Fluorophore 7 (D7Z1) α-satellite Probe: Green Fluorophore
10 tests - Reference LPU011
Download the protocol
Williams-Beuren Syndrome (WBS), caused by a microdeletion of 7q11.23, results in connective tissue problems, supravalvular aortic stenosis (SVAS), growth retardation, renal anomalies, transient hypercalcaemia, hyperacusis and mental retardation.
The 1.6Mb WBS deletion region contains the GTF2l/NCF1 and GTF2lP1/NCF1 P1 loci, with unequal intrachromosomal exchanges between them thought to cause the deletions.
The Williams-Beuren deletion directly labelled probe mixture consists three non-overlapping clones, which cover most of the 1.6Mb deletion region (red fluorophore with specificity to Texas Red spectrum); and a 7 centromere alpha-satellite (D7Z1) (green fluorophore with specificity to FITC spectrum) control probe.
Wolf-Hirschhorn + 4qter control Probes
Wolf-Hirschhorn Critical Region (WHSCR) Probe : Red Fluorophore 4q Subtelomere Specific Probe (clone dj963K6): Green Fluorophore
10 tests - Reference LPU009
Download the protocol
Wolf-Hirschhorn syndrome, caused by a partial deletion of a minimum of 165 Kb of chromosome 4 (4p16.3, between D4S166 and D4S3327), is characterised by severe growth deficiency, severe to profound mental retardation with the onset of convulsions in early infancy, microcephaly, sacral dimples and characteristic facies ('Greek helmet appearance').
The Wolf-Hirschhorn Critical Region Probe targets the entire 165 Kb critical regiondirectly labelled with a red fluorophore (Texas Red spectrum) and is supplied with asubtelomere specific control probe, which is also directly labelled with a green fluorophore (FITC spectrum).
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